PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG699600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 266aa    MW: 28695.1 Da    PI: 7.9327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG699600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12199243654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++Er RR ri +++ +L++l+P+     +k  + +++L +AveYIk+L
  Pavir.5KG699600.1.p 199 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 243
                          689*********************7....688***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15196253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-12197248No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15198254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-10199243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
GEIRVPPQQH QSLAPPGPPH GLLRHSSSPA GLLSRLTADP HGMAPASGMG SYSQAGTDAA  60
MAHGHRQLSS QWSFSRQDLP RISEMGMIPA DIGESIVAGG GCNSSSDGAA QSSSYLSRNF  120
SVSSWDDTNS IMFSSSPNKK PKLDAADDMV TSFSNIDSQF GLSKSSLEMP GMDDYLQLQQ  180
DSVACRVRAK RGCATHPRSI AERERRTRIS KRLKKLQDLV PNMDKQTNTS DMLDLAVEYI  240
KELKGQVEKL KHDQANCFCS GNQNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.94340.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9703330.0EU970333.1 Zea mays clone 343433 mRNA sequence.
GenBankEU9728510.0EU972851.1 Zea mays clone 389073 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970931.11e-159PREDICTED: transcription factor bHLH128-like
TrEMBLK3XGV21e-157K3XGV2_SETIT; Uncharacterized protein
STRINGSi001123m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-52bHLH family protein